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Introduction Erik Segerdell Oregon Health & Science University RCN Meeting NESCent 25 February 2011
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XAO describes the anatomy and development of the African frog Xenopus Used to annotate and search for gene expression patterns in Xenbase (www.xenbase.org)www.xenbase.org OBO Foundry ontology, edited in OBO-Edit Anatomical systems, cell and tissue types classified according to Common Anatomy Reference Ontology (CARO) Lineage of tissues represented by develops from relationships, start and end stages Xenopus Anatomy Ontology
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Eagle-i: a prototype of a biomedical research resource discovery network Data model designed in CMAP, implemented in Protégé Re-use/coordination of existing terminologies Upcoming challenges: enhancement of genotype and phenotype representation eagle-i dx.doi.org/10.1038/npre.2010.5176.1
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RCN Ontology Coordination Help integrate ontologies at a high level as per the needs of the working groups and recommendations of the Advisory Board Advise on best practices Provide a ‘help desk’ function to new groups who are developing ontologies Help with RCN website administration
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